Function reference • PackageBluishgreen

Tissue Slide The tissue slide object stores and organizes the data of the cells and and applied classification methods.
`tissue_slide()`	Tissue slide information
`set_slide_metadata()`	Set metadata from a tissue slide.
`get_slide_metadata()`	Get metadata from a tissue slide.
Classification Methods for classifying the data in tissue slide objects.
`manual_classification()`	Manual classification object.
`cluster_manually()`	Cluster the cells using a manual cutoff
`get_manual_classification()`	Get the manual classification from a tissue slide
`get_manual_classification_cutoff()`	Get the cutoff of a manual classification object.
`get_manual_classification_transform()`	Get the transform function of a manual classification object.
Statisitics and summarization Functions for analyzing and summarizing clusters.
`summarize_cluster_results()`	Summarize the cluster results
Visualization Functions to visualize the data and classification results.
`plot_tissue()`	Plot the tissue slide showing the FITC intensity
`plot_density()`	Plot the distribution of FITC intensities
`plot_slide_clusters()`	Plot the clusters on the slide
`theme_tissue_slide()`	A ggplot2 theme for tissue slide plots
Data Some example data sets.
`pancreas`	An example dataset from TUNEL on a pancreas.

Reference