Plot the tissue slide showing the FITC intensity

Plots the slide with each point representing a cell and the color represents the intensity of FITC.

plot_tissue(
  ts,
  color,
  prop = 0.25,
  point_size = 0.5,
  point_alpha = 0.8,
  color_pal = "RdYlBu"
)

Arguments

ts

Tissue slide object to plot.
color

The column to use for coloring each cell. (enquoted)
prop

The proportion of cells to plot (too many cells can slow performance).
point_size

Size of each point.
point_alpha

Transparency of each point.
color_pal

A diverging color palette to be passed to ggplot2::scale_color_distiller().

Value

A ggplot2 plot

Examples

plot_tissue(tissue_slide(pancreas), color = fitc)