Plot the clusters on the slide

Plot the clusters on the slide

plot_slide_clusters(
  ts,
  method = "manual",
  prop = 0.25,
  point_size = 0.5,
  alpha_values = c(0.2, 0.7)
)

Arguments

ts	A tissue slide object
method	The classification method to use. The classification should have already been done.
prop	The proportion of cells to include in the plot (too many cells can impact performance).
point_size	Size of each point.
alpha_values	A two-value vector where each value indicates the transparency of points coming from the two clusters.

Value

A ggplot2 object.

Examples

pancreas_slide <- tissue_slide(pancreas)
pancreas_slide <- cluster_manually(pancreas_slide,
  fitc,
  cutoff = 4,
  transform = log10
)
plot_slide_clusters(pancreas_slide)